https://doi.org/10.25678/0001SM

Data for: Niche partitioning of methane-oxidizing bacteria at the oxygen-methane interface of stratified lakes

In this study we sampled Lake Rotsee, Greifensee, Zug and Lugano to derive general patterns of methane-oxidizing bacteria in proximity to the oxygen-methane interface of these four stratified lakes. We used Illumina amplicon sequencing for the analysis of the 16S rRNA and the 16S rRNA gene as well as pmoA gene and transcripts together with potential methane oxidation rates based on incubations with 13C-CH4.

Dataset extent

Data and Resources

Citation

This Data Package

Buergmann, H., Mayr, M., Zimmermann, M., Guggenheim, C., & Brand, A. (2019). Data for: Niche partitioning of methane-oxidizing bacteria at the oxygen-methane interface of stratified lakes [Data set]. Eawag: Swiss Federal Institute of Aquatic Science and Technology. https://doi.org/10.25678/0001SM
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The associated article

Mayr, M. J., M. Zimmermann, C. Guggenheim, A. Brand, and H. Bürgmann (2019), Niche partitioning of methane-oxidizing bacteria along the oxygen–methane counter gradient of stratified lakes, The ISME Journal, 14(1), 274–287, doi:10.1038/s41396-019-0515-8.
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Metadata

  Publication Data Package for:
Open Data Open Data
Author
  • Buergmann, Helmut
  • Mayr, Magdalena
  • Zimmermann, Matthias
  • Guggenheim, Carole
  • Brand, Andreas
Keywords Methanotroph,Methylococcales,Methylomirabilis,vertical profiling,pmoA_RNA,16SrRNA,pmoA_DNA,16SrDNA
Variables
  • concentration
  • dissolved_inorganic_carbon
  • electric_conductivity
  • fluorescence
  • PAR
  • pH
  • pressure
  • salinity
  • temperature
  • total_nitrogen
  • total_organic_carbon
  • turbidity
Substances (scientific names)
  • CH4 (InChI=1S/CH4/h1H4)
  • O2 (InChI=1S/O2/c1-2)
Substances (generic terms)
  • common ions
  • nutrients
Taxa (scientific names)
  • Ca. Methylomirabilis limnetica
  • Methylococcales
Organisms (generic terms)
  • Methanotrophic bacteria
Systems
  • lake
Timerange
  • 2015-07-27 TO 2015-11-04
Geographic Name(s)
  • Greifensee
  • Luganersee
  • Rotsee
  • Zugersee
Review Level none
Curator Mayr, Magdalena
Contact magdalena.mayr@eawag.ch
DOI 10.25678/0001SM