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On July 10, 2024 at 1:23:15 PM UTC,
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Added resource Figure_6_Ma.zip to Data for: Metabolic interactions regulate the transfer and proliferation of plasmid-encoded antibiotic resistance during surface-associated microbial growth
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2 | "author": [ | 2 | "author": [ | ||
3 | "Yinyin, Ma", | 3 | "Yinyin, Ma", | ||
4 | "Anton, Kan", | 4 | "Anton, Kan", | ||
5 | "Johnson, David" | 5 | "Johnson, David" | ||
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9 | "doi": "10.25678/000CZ8", | 9 | "doi": "10.25678/000CZ8", | ||
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19 | "license_title": null, | 19 | "license_title": null, | ||
20 | "maintainer": "Johnson, David", | 20 | "maintainer": "Johnson, David", | ||
21 | "maintainer_email": "Johnson, David <David.Johnson@eawag.ch>", | 21 | "maintainer_email": "Johnson, David <David.Johnson@eawag.ch>", | ||
22 | "metadata_created": "2024-07-10T13:22:39.747792", | 22 | "metadata_created": "2024-07-10T13:22:39.747792", | ||
n | 23 | "metadata_modified": "2024-07-10T13:23:14.454038", | n | 23 | "metadata_modified": "2024-07-10T13:23:14.969147", |
24 | "name": "metabolic-interactions-regulate-plasmid-transfer", | 24 | "name": "metabolic-interactions-regulate-plasmid-transfer", | ||
25 | "notes": "Surface-associated microbial systems are hotspots for the | 25 | "notes": "Surface-associated microbial systems are hotspots for the | ||
26 | spread of plasmid-encoded antibiotic resistance, but how surface | 26 | spread of plasmid-encoded antibiotic resistance, but how surface | ||
27 | association affects plasmid transfer and proliferation remains | 27 | association affects plasmid transfer and proliferation remains | ||
28 | unclear. Surface association enables prolonged spatial proximities | 28 | unclear. Surface association enables prolonged spatial proximities | ||
29 | between different populations, which promotes plasmid transfer between | 29 | between different populations, which promotes plasmid transfer between | ||
30 | them. However, surface association also fosters strong metabolic | 30 | them. However, surface association also fosters strong metabolic | ||
31 | interactions between different populations, which can direct their | 31 | interactions between different populations, which can direct their | ||
32 | spatial self-organization with consequences for plasmid transfer and | 32 | spatial self-organization with consequences for plasmid transfer and | ||
33 | proliferation. Here, we hypothesize that metabolic interactions direct | 33 | proliferation. Here, we hypothesize that metabolic interactions direct | ||
34 | the spatial self-organization of different populations and, in turn, | 34 | the spatial self-organization of different populations and, in turn, | ||
35 | regulate the spread of plasmid-encoded antibiotic resistance. We show | 35 | regulate the spread of plasmid-encoded antibiotic resistance. We show | ||
36 | that resource competition causes populations to spatially segregate, | 36 | that resource competition causes populations to spatially segregate, | ||
37 | which represses plasmid transfer. In contrast, resource cross-feeding | 37 | which represses plasmid transfer. In contrast, resource cross-feeding | ||
38 | causes populations to spatially intermix, which promotes plasmid | 38 | causes populations to spatially intermix, which promotes plasmid | ||
39 | transfer. We further show that the spatial positionings that emerge | 39 | transfer. We further show that the spatial positionings that emerge | ||
40 | from metabolic interactions determine the proliferation of plasmid | 40 | from metabolic interactions determine the proliferation of plasmid | ||
41 | recipients. Our results demonstrate that metabolic interactions are | 41 | recipients. Our results demonstrate that metabolic interactions are | ||
42 | important regulators of both the transfer and proliferation | 42 | important regulators of both the transfer and proliferation | ||
43 | plasmid-encoded antibiotic resistance. ", | 43 | plasmid-encoded antibiotic resistance. ", | ||
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47 | "organization": { | 47 | "organization": { | ||
48 | "approval_status": "approved", | 48 | "approval_status": "approved", | ||
49 | "created": "2019-09-18T14:11:46.562834", | 49 | "created": "2019-09-18T14:11:46.562834", | ||
50 | "description": "Our research is inspired by the extraordinary | 50 | "description": "Our research is inspired by the extraordinary | ||
51 | levels of biodiversity that are typically present within microbial | 51 | levels of biodiversity that are typically present within microbial | ||
52 | communities. For example, a single liter from a lake, a river, or the | 52 | communities. For example, a single liter from a lake, a river, or the | ||
53 | aeration basin of a wastewater treatment plant is estimated to contain | 53 | aeration basin of a wastewater treatment plant is estimated to contain | ||
54 | many thousands of microbial strains and express tremendous numbers of | 54 | many thousands of microbial strains and express tremendous numbers of | ||
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234 | "review_level": "domain", | 261 | "review_level": "domain", | ||
235 | "reviewed_by": "redacted", | 262 | "reviewed_by": "redacted", | ||
236 | "spatial": "", | 263 | "spatial": "", | ||
237 | "state": "active", | 264 | "state": "active", | ||
238 | "status": "complete", | 265 | "status": "complete", | ||
239 | "substances": [ | 266 | "substances": [ | ||
240 | "None" | 267 | "None" | ||
241 | ], | 268 | ], | ||
242 | "substances_generic": [ | 269 | "substances_generic": [ | ||
243 | "None" | 270 | "None" | ||
244 | ], | 271 | ], | ||
245 | "systems": [ | 272 | "systems": [ | ||
246 | "lab" | 273 | "lab" | ||
247 | ], | 274 | ], | ||
248 | "tags": [ | 275 | "tags": [ | ||
249 | { | 276 | { | ||
250 | "display_name": "Antibiotic resistance", | 277 | "display_name": "Antibiotic resistance", | ||
251 | "id": "2bcdfb9d-2cd6-4473-ac57-8750b9377451", | 278 | "id": "2bcdfb9d-2cd6-4473-ac57-8750b9377451", | ||
252 | "name": "Antibiotic resistance", | 279 | "name": "Antibiotic resistance", | ||
253 | "state": "active", | 280 | "state": "active", | ||
254 | "vocabulary_id": null | 281 | "vocabulary_id": null | ||
255 | }, | 282 | }, | ||
256 | { | 283 | { | ||
257 | "display_name": "Conjugation", | 284 | "display_name": "Conjugation", | ||
258 | "id": "bd1f8f85-811b-4587-ab36-4ac382dc3c5f", | 285 | "id": "bd1f8f85-811b-4587-ab36-4ac382dc3c5f", | ||
259 | "name": "Conjugation", | 286 | "name": "Conjugation", | ||
260 | "state": "active", | 287 | "state": "active", | ||
261 | "vocabulary_id": null | 288 | "vocabulary_id": null | ||
262 | }, | 289 | }, | ||
263 | { | 290 | { | ||
264 | "display_name": "Horizontal gene transfer", | 291 | "display_name": "Horizontal gene transfer", | ||
265 | "id": "1858f074-6d15-4793-8946-84f4be2a58e6", | 292 | "id": "1858f074-6d15-4793-8946-84f4be2a58e6", | ||
266 | "name": "Horizontal gene transfer", | 293 | "name": "Horizontal gene transfer", | ||
267 | "state": "active", | 294 | "state": "active", | ||
268 | "vocabulary_id": null | 295 | "vocabulary_id": null | ||
269 | }, | 296 | }, | ||
270 | { | 297 | { | ||
271 | "display_name": "Microbial Interactions", | 298 | "display_name": "Microbial Interactions", | ||
272 | "id": "bb32c4ea-0e93-4d8a-a377-2ef188182959", | 299 | "id": "bb32c4ea-0e93-4d8a-a377-2ef188182959", | ||
273 | "name": "Microbial Interactions", | 300 | "name": "Microbial Interactions", | ||
274 | "state": "active", | 301 | "state": "active", | ||
275 | "vocabulary_id": null | 302 | "vocabulary_id": null | ||
276 | }, | 303 | }, | ||
277 | { | 304 | { | ||
278 | "display_name": "Range expansion", | 305 | "display_name": "Range expansion", | ||
279 | "id": "c9a3d5a2-d768-4d68-a1fd-baeb4e243ec4", | 306 | "id": "c9a3d5a2-d768-4d68-a1fd-baeb4e243ec4", | ||
280 | "name": "Range expansion", | 307 | "name": "Range expansion", | ||
281 | "state": "active", | 308 | "state": "active", | ||
282 | "vocabulary_id": null | 309 | "vocabulary_id": null | ||
283 | } | 310 | } | ||
284 | ], | 311 | ], | ||
285 | "tags_string": "Antibiotic resistance,Horizontal gene | 312 | "tags_string": "Antibiotic resistance,Horizontal gene | ||
286 | transfer,Conjugation,Microbial Interactions,Range expansion", | 313 | transfer,Conjugation,Microbial Interactions,Range expansion", | ||
287 | "taxa": [ | 314 | "taxa": [ | ||
288 | "Pseudomonas stutzeri" | 315 | "Pseudomonas stutzeri" | ||
289 | ], | 316 | ], | ||
290 | "taxa_generic": [ | 317 | "taxa_generic": [ | ||
291 | "bacteria" | 318 | "bacteria" | ||
292 | ], | 319 | ], | ||
293 | "timerange": [ | 320 | "timerange": [ | ||
294 | "2018 TO 2023" | 321 | "2018 TO 2023" | ||
295 | ], | 322 | ], | ||
296 | "title": "Data for: Metabolic interactions regulate the transfer and | 323 | "title": "Data for: Metabolic interactions regulate the transfer and | ||
297 | proliferation of plasmid-encoded antibiotic resistance during | 324 | proliferation of plasmid-encoded antibiotic resistance during | ||
298 | surface-associated microbial growth", | 325 | surface-associated microbial growth", | ||
299 | "type": "dataset", | 326 | "type": "dataset", | ||
300 | "url": "https://doi.org/10.25678/000CZ8/", | 327 | "url": "https://doi.org/10.25678/000CZ8/", | ||
301 | "variables": [ | 328 | "variables": [ | ||
302 | "concentration", | 329 | "concentration", | ||
303 | "fluorescence", | 330 | "fluorescence", | ||
304 | "bacteria_abundance", | 331 | "bacteria_abundance", | ||
305 | "flow_cytometric_cell_counts" | 332 | "flow_cytometric_cell_counts" | ||
306 | ], | 333 | ], | ||
307 | "version": null | 334 | "version": null | ||
308 | } | 335 | } |