https://doi.org/10.25678/0005ET

Data for: Inferring Transmission Fitness Advantage of SARS-CoV-2 Variants of Concern in Switzerland from Wastewater Samples Using Digital PCR in Switzerland from December 2020 through March 2021.

Wastewater samples from ARA Werdhölzli were analyzed for the presence of SARS-CoV-2 RNA from December 2020 through March 2021 using digital PCR. The digital PCR assay was a drop-off assay using primers and probes covering the spike deletion 69-70 and the ORF1a deletion 3675-5677. The drop-off assay allows quantitative estimates of the proportion of the total SARS-CoV-2 RNA in the wastewater that contains the target deletion regions. The data was collected, analyzed, and reported within the following manuscript: Caduff L, Dreifuss D, Schindler T, Devaux AJ, Ganesanandamoorthy P, Kull A, Stachler E, Fernandez-Cassi X, Beerenwinkel N, Kohn T, Ort C, Julian TR. Inferring transmission fitness advantage of SARS-CoV-2 variants of concern in wastewater using digital PCR. In Preparation.

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Data and Resources

Citation

This Data Package

Julian, T., Kull, A., Stachler, E., Fernandez, X., Beerenwinkel, N., Kohn, T., et al. (2021). Data for: Inferring Transmission Fitness Advantage of SARS-CoV-2 Variants of Concern in Switzerland from Wastewater Samples Using Digital PCR in Switzerland from December 2020 through March 2021. (Version 1.0) [Data set]. Eawag: Swiss Federal Institute of Aquatic Science and Technology. https://doi.org/10.25678/0005ET
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The associated article

Caduff, L., Dreifuss, D., Schindler, T., Devaux, A. J., Ganesanandamoorthy, P., Kull, A., et al. (2022). Inferring transmission fitness advantage of SARS-CoV-2 variants of concern from wastewater samples using digital PCR, Switzerland, December 2020 through March 2021. Eurosurveillance, 27(10). https://doi.org/10.2807/1560-7917.es.2022.27.10.2100806
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Metadata

  Publication Data Package for:
Open Data Open Data
Author
  • Julian, Tim
  • Kull, Anina
  • Stachler, Elyse
  • Fernandez, Xavier
  • Beerenwinkel, Niko
  • Kohn, Tamar
  • Ort, Christoph
  • Caduff, Lea
  • Dreifuss, David
  • Schindler, Tobias
  • Devaux, Alexander Jefferson
  • Ganesanandamoorthy, Pravin
Keywords SARS-CoV-2,digital PCR,Municipal wastewater
Taxa (scientific names)
  • SARS-CoV-2
Systems
  • sewage system
Timerange
  • 2020-12 TO 2021-03
Review Level general
Curator Caduff, Lea
Contact Julian, Tim <Tim.Julian@eawag.ch>
DOI 10.25678/0005ET