https://doi.org/10.25678/0003R9

Data for: HistoNet: predicting size histograms of object instances

We propose to predict histograms of object sizes in crowded scenes directly without any explicit object instance segmentation. What makes this task challenging is the high density of objects (of the same category), which makes instance identification hard. Instead of explicitly segmenting object instances, we show that directly learning histograms of object sizes improves accuracy while using drastically less parameters. This is very useful for application scenarios where explicit, pixel-accurate instance segmentation is not needed, but there lies interest in the overall distribution of instance sizes. Our core applications are in biology, where we estimate the size distribution of soldier fly larvae, and medicine, where we estimate the size distribution of cancer cells as an intermediate step to calculate the tumor cellularity score. Given an image with hundreds of small object instances, we output the total count and the size histogram. We also provide a new data set for this task, the FlyLarvae data set, which consists of 11, 000 larvae instances labeled pixel-wise. Our method results in an overall improvement in the count and size distribution prediction as compared to state-of-the-art instance segmentation method Mask R-CNN [11].

Data and Resources

Citation

This Data Package

Sharma, K., Gold, M., Zurbruegg, C., Leal-Taixé, L., & Wegner, J. D. (2021). Data for: HistoNet: predicting size histograms of object instances (Version 1.0) [Data set]. Eawag: Swiss Federal Institute of Aquatic Science and Technology. https://doi.org/10.25678/0003R9

The associated article

Sharma, K., Gold, M., Zurbruegg, C., Leal-Taixe, L., & Wegner, J. D. (2020). HistoNet: Predicting size histograms of object instances. Institute of Electrical and Electronics Engineers (IEEE). https://doi.org/10.1109/wacv45572.2020.9093484

Metadata

Open Data Open Data
Author(s)
  • Sharma, Kishan
  • Gold, Moritz
  • Zurbruegg, Christian
  • Leal-TaixĂ©, Laura
  • Wegner, Jan Dirk
Keywords Histograms,Image segmentation,Task analysis,Estimation,Computer architecture,Training
Taxa (scientific names)
  • Hermetia illucens
Organisms (generic terms)
  • black soldier fly
Systems
  • lab
Timerange
  • 2018-02 TO 2018-12
Geographic Name(s)
  • Zurich, Switzerland
Review Level general
Curator Gold, Moritz
Contact Moritz.Gold@eawag.ch
DOI 10.25678/0003R9