https://doi.org/10.25678/0009B3

Data for: Denitrification in low oxic environments increases the accumulation of nitrogen oxide intermediates and modulates the evolutionary potential of microbial populations

Denitrification in oxic environments occurs when a microorganism uses nitrogen oxides as terminal electron acceptors even though oxygen is available. While this phenomenon is well-established, its consequences on ecological and evolutionary processes remain poorly understood. We hypothesize here that denitrification in oxic environments can modify the accumulation profiles of nitrogen oxide intermediates, with cascading effects on the evolutionary potentials of denitrifying microorganisms. To test this, we performed laboratory experiments with Paracoccus denitrificans and complemented them with individual-based computational modeling. We found that denitrification in low oxic environments significantly increases the accumulation of nitrite and nitric oxide. We further found that the increased accumulation of these intermediates has a negative effect on growth at low pH. Finally, we found that the increased negative effect at low pH increases the number of individuals that contribute to surface-associated growth. This increases the amount of genetic diversity that is preserved from the initial population, thus increasing the number of genetic targets for natural selection to act upon and resulting in higher evolutionary potentials. Together, our data highlight that denitrification in low oxic environments can profoundly affect the ecological processes and evolutionary potentials of denitrifying microorganisms by modifying the accumulation of nitrogen oxide intermediates.

Data and Resources

Citation

This Data Package

Johnson, D., Takahashi, K., & Ruan, C. (2023). Data for: Denitrification in low oxic environments increases the accumulation of nitrogen oxide intermediates and modulates the evolutionary potential of microbial populations (Version 1.0) [Data set]. Eawag: Swiss Federal Institute of Aquatic Science and Technology. https://doi.org/10.25678/0009B3

The associated article

Takahashi, K., Oshiki, M., Ruan, C., Morinaga, K., Toyofuku, M., Nomura, N., & Johnson, D. R. (2023). Denitrification in low oxic environments increases the accumulation of nitrogen oxide intermediates and modulates the evolutionary potential of microbial populations. Environmental Microbiology Reports. https://doi.org/10.1111/1758-2229.13221

Metadata

  Publication Data Package for:
Open Data Open Data
Long-term data Long-term data
Author
  • Johnson, David
  • Takahashi, Kohei
  • Ruan, Chujin
Keywords denitrification,microbial communities,range expansion,nitrite toxicity
Variables
  • bacteria_abundance
  • concentration
  • flow_cytometric_cell_counts
  • fluorescence
Substances (scientific names)
  • nitrate (InChI=1S/NO3/c2-1(3)4/q-1), nitrite (InChI=1S/HNO2/c2-1-3/h(H,2,3)/p-1), nitric oxide (InChI=1S/NO/c1-2), nitrous oxide (InChI=1S/N2O/c1-2-3)
Substances (generic terms)
  • nitrogen oxides
Taxa (scientific names)
  • Pseudomonas stutzeri
Organisms (generic terms)
  • bacteria
Systems
  • lab
Timerange
  • 2021 TO 2023
Review Level domain specific
Curator Johnson, David
Contact Johnson, David <David.Johnson@eawag.ch>
DOI 10.25678/0009B3